Basic Information
Locus ID:
CH06.1199
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 10812635 | 10813120 | + | CH06.1199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 17,185.96 Da | 72.69 | 84.41 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 100 | 142 | 3.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 148 | 5.98E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 147 | 4.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 100 | 141 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 100 | 142 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 65 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004966870.1 | E3 ubiquitin-protein ligase RNF181 [Setaria italica] | 5.88E-61 |
| TrEMBL | K3Y1V3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101759071 PE=4 SV=1 | 1.33E-59 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH06.1062, BH06.1099, BH06.1102, BH06.1103, BH06.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_6AG0516090, gene-QOZ80_6AG0516120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0092440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_015245, gene-QYE76_029210, gene-QYE76_029211 ... |
| Poaceae | Oryza coarctata | 1 | Oco11G006830 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g14640.1, LOC_Os06g14650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G110300, gene-BS78_K035000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201501, Pt_Chr0201502, Pt_Chr0404508, Pt_Chr0404509 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G018380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G374000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG016420 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G422300.1.cds1, TraesCS1D02G430400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50336, nbis-gene-56364 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29463, Zma_g31703 |