Basic Information
Locus ID:
CH06.1197
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 10760549 | 10770433 | + | CH06.1197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 132,099.44 Da | 49.48 | 77.42 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 247 | 290 | 6.74373E-14 | - |
| Pfam | PF00069 | Protein kinase domain | 41 | 130 | 5.4E-18 | IPR000719 |
| Pfam | PF13639 | Ring finger domain | 248 | 290 | 4.3E-11 | IPR001841 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 147 | 3.16E-25 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 296 | 4.04E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 25 | 144 | 3.2E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 215 | 295 | 1.2E-17 | IPR013083 |
| SMART | SM00220 | serkin_6 | 1 | 135 | 0.0015 | IPR000719 |
| SMART | SM00184 | ring_2 | 248 | 289 | 5.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 290 | 12.090947 | IPR001841 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 140 | 16.11772 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1170 | 1192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 643 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1161 | 1199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 644 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 2.56E-42 |
| RefSeq | XP_025813222.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 5.79E-55 |
| Q75GE8 | Calcium-dependent protein kinase 8 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK8 PE=2 SV=1 | 4.24E-43 | |
| TrEMBL | A0A4U6VYN9 | Reverse transcriptase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G016600v2 PE=4 SV=1 | 2.77E-139 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 53 | AH01.2876, AH01.32, AH02.628, AH03.1625, AH03.1818, AH06.974 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046977 |
| Poaceae | Oryza coarctata | 1 | Oco17G000100 |
| Poaceae | Paspalum vaginatum | 8 | gene-BS78_01G253900, gene-BS78_02G100600, gene-BS78_K215400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302147, Pt_Chr0601454 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G023520, Chr01G024930, Chr05G016830, Chr05G025730 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5044 |