Basic Information
Locus ID:
CH06.1049
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ethylene-responsive protein kinase Le-CTR1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH06 | 9191047 | 9213783 | - | CH06.1049 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 188,736.83 Da | 50.36 | 80.12 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 803 | 1034 | 7.6591E-115 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 797 | 1034 | 1.1E-60 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1538 | 1684 | 2.4E-28 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 1197 | 1478 | 2.6E-48 | IPR000719 |
| Pfam | PF14381 | Ethylene-responsive protein kinase Le-CTR1 | 168 | 366 | 1.0E-68 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1525 | 1698 | 2.83E-41 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 781 | 1034 | 7.55E-76 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1180 | 1481 | 9.44E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 790 | 874 | 6.2E-32 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1529 | 1613 | 4.0E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1157 | 1270 | 1.3E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1614 | 1699 | 1.2E-20 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1288 | 1496 | 5.8E-51 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 876 | 1044 | 1.5E-53 | - |
| SMART | SM00220 | serkin_6 | 797 | 1049 | 9.5E-51 | IPR000719 |
| SMART | SM00220 | serkin_6 | 1196 | 1485 | 1.4E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1196 | 1485 | 38.70385 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1536 | 1700 | 26.760622 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 797 | 1052 | 38.859325 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 803 | 825 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1333 | 1345 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1655 | 1667 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 916 | 928 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1202 | 1224 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 777 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1174 | - | - |
| Coils | Coil | Coil | 91 | 134 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18160.2 | - | 1.49E-255 |
| RefSeq | XP_004965058.1 | probable serine/threonine-protein kinase SIS8 isoform X1 [Setaria italica] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 8.77E-250 | |
| TrEMBL | K3XUY6 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101767850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13330, jg27008 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19984 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002212 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg32008, Sbi_jg57337 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53992, Sgl59326 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004445, gene:ENSEOMG00000022430 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014000, CQ.Regalona.r1.5BG0014570 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30150090, pistato.v30292110 |
| Apiaceae | Apium graveolens | 3 | Ag4G00690, Ag4G00691, Ag7G02483 |
| Arecaceae | Cocos nucifera | 2 | scaffold003768G000020, scaffold003768G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695944 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G12395, Ftri6G13516, Ftri8G18347 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18160.1, AT1G73660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006685m.g.v1.0, Thhalv10018059m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g16150.v2.2, Sp5g28840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g052000.2N, BniB04g032620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2843 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2996 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.104 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033264 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G16546, Lb3G16558, Lb3G16559 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.924, AH07.3446, BH06.954, BH07.3276, CH06.1049 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145410, gene-QOZ80_2BG0200850 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0615510.1, HORVU.MOREX.r3.7HG0666850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028939 |
| Poaceae | Oryza coarctata | 4 | Oco03G021390, Oco04G022010, Oco11G006020, Oco12G006050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g50970.1, LOC_Os06g12590.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G276100, gene-BS78_10G097900 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0203341, Pt_Chr0301178, Pt_Chr0404700, Pt_Chr0404755 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G002430, Chr09G020370, Chr11G019450, Chr13G004530 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G551600, Tel7E01G350500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG046420, gene_TRIDC6BG054100 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G308500.1, TraesCS6B02G337200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb254410_P001, Zm00001eb372210_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-51386, nbis-gene-8736 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14410, Zma_g29401, Zma_g31637 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2242, evm.TU.LG14.1415 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g31140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.722 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14384 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4291 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12341 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000061l.12 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009016 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-940 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8399 |
| Salicaceae | Populus euphratica | 2 | populus_peu28272, populus_peu29725 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599808, gene-LOC132633248 |
| Solanaceae | Solanum chilense | 2 | SOLCI000422700, SOLCI003030600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014282, gene-LOC107023126 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12648 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16700.v3.1 |