Basic Information
Locus ID:
CH05.897
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 7101157 | 7102392 | + | CH05.897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 42,996.32 Da | 73.36 | 59.90 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 213 | 254 | 7.49148E-24 | - |
| Pfam | PF13639 | Ring finger domain | 212 | 254 | 1.5E-10 | IPR001841 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 282 | 392 | 1.4E-41 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 10 | 53 | 2.1E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 259 | 4.42E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 260 | 2.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 213 | 253 | 9.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 213 | 254 | 12.017182 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 375 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 6.36E-77 |
| RefSeq | XP_004960533.1 | E3 ubiquitin-protein ligase RDUF2-like [Setaria italica] | 9.57E-207 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 6.14E-76 | |
| TrEMBL | A0A4U6VAB6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_3G067666v2 PE=4 SV=1 | 2.16E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology