Basic Information
Locus ID:
CH05.744
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA (cytosine-5-)-methyltransferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 5730749 | 5739103 | + | CH05.744 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 140,137.34 Da | 51.53 | 74.15 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 823 | 879 | 4.95145E-32 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 843 | 877 | 3.4E-8 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 885 | 1248 | 1.3E-37 | IPR001525 |
| Pfam | PF01426 | BAH domain | 564 | 676 | 3.1E-9 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 811 | 881 | 8.61E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 717 | 1249 | 3.16E-77 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 720 | 1266 | 3.0E-217 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1042 | 1215 | 3.0E-217 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 497 | 665 | 1.3E-46 | IPR043151 |
| SMART | SM00298 | chromo_7 | 823 | 882 | 4.4E-7 | IPR000953 |
| SMART | SM00439 | BAH_4 | 563 | 680 | 1.9E-15 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 563 | 680 | 17.455385 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 824 | 877 | 10.856101 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 718 | 1256 | 47.373013 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1231 | 1249 | - | IPR031303 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 894 | 906 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 847 | 867 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 937 | 951 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 719 | 735 | 1.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 983 | 996 | 1.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 226 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 1.9E-270 |
| RefSeq | XP_025806233.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X1 [Panicum hallii] | 0 |
| Q5KQL9 | DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3H701 | DNA (cytosine-5-)-methyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_3G074800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology