Basic Information
Locus ID:
CH05.655
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 5063680 | 5065230 | - | CH05.655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 54,959.51 Da | 33.72 | 88.93 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 48 | 205 | 1.4E-22 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 391 | 461 | 1.2E-12 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 45 | 203 | 8.75E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 48 | 216 | 4.2E-38 | IPR036465 |
| SMART | SM00327 | VWA_4 | 46 | 215 | 5.6E-21 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 48 | 218 | 18.5298 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.01E-43 |
| RefSeq | XP_039798718.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 6.12E-231 |
| Q61704 | Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mus musculus OX=10090 GN=Itih3 PE=1 SV=3 | 1.49E-8 | |
| TrEMBL | A0A8T0TZN3 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054000 PE=4 SV=1 | 1.39E-229 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology