Basic Information
Locus ID:
CH05.652
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 5051728 | 5054905 | - | CH05.652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 77,461.35 Da | 45.08 | 84.76 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 609 | 678 | 6.2E-14 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 269 | 428 | 1.9E-20 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 266 | 433 | 5.37E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 269 | 437 | 2.5E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 267 | 436 | 3.5E-21 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 269 | 439 | 18.001484 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| Coils | Coil | Coil | 612 | 632 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 7.96E-38 |
| RefSeq | XP_039798713.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 3.31E-265 |
| Q55874 | Uncharacterized protein sll0103 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0103 PE=4 SV=1 | 1.81E-11 | |
| TrEMBL | A0A3L6RAZ4 | VWFA domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G11250 PE=4 SV=1 | 7.34E-269 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology