Basic Information
Locus ID:
CH05.625
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Transmembrane amino acid transporter protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 4805574 | 4808699 | + | CH05.625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.77 | 82,697.88 Da | 68.48 | 65.22 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01490 | Transmembrane amino acid transporter protein | 398 | 505 | 2.4E-20 | IPR013057 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 376 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63850.1 | amino acid permease 4. Amino acid transporter whose expression is downregulated by dehydration. | 3.16E-30 |
| RefSeq | XP_039840512.1 | amino acid permease 3-like [Panicum virgatum] | 2.05E-44 |
| Q9FN04 | Amino acid permease 4 OS=Arabidopsis thaliana OX=3702 GN=AAP4 PE=1 SV=1 | 3.1E-29 | |
| TrEMBL | A0A8T0TSQ7 | Aa_trans domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG033330 PE=4 SV=1 | 1.29E-46 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||