Basic Information
Locus ID:
CH05.592
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 4601430 | 4610255 | - | CH05.592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 65,968.22 Da | 61.68 | 60.38 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15565 | PHD2_NSD | 393 | 457 | 8.69358E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 391 | 480 | 8.6E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 106 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 208 | 6.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 323 | 390 | 3.1E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 177 | 244 | 7.9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 393 | 458 | 0.025 | IPR001965 |
| SMART | SM00249 | PHD_3 | 108 | 176 | 0.94 | IPR001965 |
| SMART | SM00249 | PHD_3 | 327 | 388 | 2.3 | IPR001965 |
| SMART | SM00249 | PHD_3 | 42 | 103 | 0.73 | IPR001965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 318 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55390.1 | ENHANCED DOWNY MILDEW 2. Encodes EDM2 (enhanced downy mildew 2). The predicted protein bears typical features of transcriptional regulators. EDM2 contains two putative bipartite nuclear localization signals (NLS) two zinc-finger-like motifs, a Proline-rich region and a large aspartic acid-rich region. Both zinc-finger-like stretches resemble the PHD (plant homeodomain) finger motif. Mutations in EDM2 comprise RPP7 mediated resistance against Hyaloperonospora parasitica isolate Hiks1 (HpHiks1). EDM2 may function as a direct or indirect regulator of RPP7 expression. | 6.37E-59 |
| RefSeq | XP_039802530.1 | protein ENHANCED DOWNY MILDEW 2-like [Panicum virgatum] | 1.16E-163 |
| F4K3G5 | Protein ENHANCED DOWNY MILDEW 2 OS=Arabidopsis thaliana OX=3702 GN=EDM2 PE=1 SV=1 | 6.33E-58 | |
| TrEMBL | A0A8T0U2W5 | PHD-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG061700 PE=4 SV=1 | 2.63E-162 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19095 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12177, gene_12178 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038395 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g089620 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg53763 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000041404 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.470.V1.1, AsparagusV1_08.1530.V1.1 |
| Poaceae | Echinochloa crus-galli | 7 | AH05.470, AH05.471, AH05.472, BH05.526, BH05.527, CH05.591 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0243650, gene-QOZ80_3BG0284580 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0463130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047976 |
| Poaceae | Oryza coarctata | 4 | Oco05G009120, Oco06G009470, Oco23G003830, Oco24G003380 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g15990.1, LOC_Os12g12300.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_08G063700, gene-BS78_08G064000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102236, Pt_Chr0701172, Pt_Chr0701311 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G008210, Chr06G026230, Chr06G026240, Chr07G003440 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G249400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG012540, gene_TRIDC4BG037750 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G092300.1, TraesCS4B02G212000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb117400_P004, Zm00001eb133860_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2027, nbis-gene-25397 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24894 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.882 |