Basic Information
Locus ID:
CH05.577
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Integrase core domain containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 4481749 | 4487386 | + | CH05.577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 108,354.22 Da | 52.07 | 73.63 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 745 | 839 | 1.16842E-16 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 361 | 452 | 3.6E-16 | IPR005162 |
| Pfam | PF13417 | Glutathione S-transferase, N-terminal domain | 50 | 111 | 2.2E-8 | IPR004045 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 58 | 116 | 5.61E-15 | IPR036249 |
| SUPERFAMILY | SSF50630 | Acid proteases | 740 | 846 | 3.13E-6 | IPR021109 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 43 | 126 | 2.5E-17 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 723 | 862 | 1.3E-25 | IPR021109 |
| ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 60 | 112 | 13.236475 | IPR004045 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 537 | 552 | 9.042855 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 141 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02390.2 | glutathione S-transferase zeta 1. Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide. | 3.1E-18 |
| RefSeq | XP_025825265.1 | uncharacterized protein LOC112900644 [Panicum hallii] | 7.21E-167 |
| O04437 | Glutathione S-transferase OS=Triticum aestivum OX=4565 GN=GSTZ1 PE=1 SV=1 | 5.11E-25 | |
| TrEMBL | Q7XRT2 | OSJNBa0042F21.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0042F21.11 PE=4 SV=2 | 1.96E-177 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12571, gene_15568 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg55472, Sbi_jg8972 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120107363 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G03390, Ftri12G31698, Ftri2G11694, FtriNA14812 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09880 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G00264, Lb3G20497, Lb4G25704 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1315, CH03.1969, CH05.577, CH08.1150 |
| Poaceae | Eleusine coracana subsp. coracana | 35 | gene-QOZ80_1AG0019390, gene-QOZ80_1BG0066180 ... |
| Poaceae | Oryza sativa | 2 | ChrUn.fgenesh.mRNA.3, LOC_Os10g04210.1 |
| Poaceae | Paspalum vaginatum | 16 | gene-BS78_01G262700, gene-BS78_02G095400, gene-BS78_K070500 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G020320, Chr09G007960, Chr10G004130, Chr20G010620 ... |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1312, nbis-gene-27882, nbis-gene-27898 ... |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG03.1598, evm.TU.LG09.83, evm.TU.LG12.179 ... |
| Solanaceae | Lycium barbarum | 13 | gene-LOC132607653, gene-LOC132607841, gene-LOC132607949 ... |