Basic Information
Locus ID:
CH05.56
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 444406 | 444915 | + | CH05.56 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.59 | 18,861.71 Da | 40.55 | 88.94 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 101 | 143 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 94 | 147 | 4.29E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 147 | 6.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 101 | 142 | 5.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 101 | 143 | 12.386007 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 1.1E-12 |
| RefSeq | XP_039840467.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum virgatum] | 1.28E-45 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 1.08E-11 | |
| TrEMBL | A0A3L6PFY8 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM18G03560 PE=4 SV=1 | 1.16E-45 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.71, CH04.137, CH05.56 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672430, gene-QOZ80_9BG0696010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003591 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G012300, gene-BS78_08G020300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G258000 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G147900.1.cds1, TraesCS5D02G144900.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb195260_P001 |