Basic Information
Locus ID:
CH05.555
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 4291702 | 4292172 | - | CH05.555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 17,121.18 Da | 60.29 | 65.19 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 83 | 141 | 2.8E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 141 | 2.04E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 50 | 143 | 4.0E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 82 | 153 | 5.8E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 81 | 141 | 14.197654 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 80 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052142257.1 | uncharacterized protein LOC127761959 [Oryza glaberrima] | 1.18E-40 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 9.07E-12 | |
| TrEMBL | A0A835ABH1 | RRM domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_059512 PE=4 SV=1 | 6.92E-58 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology