Basic Information
Locus ID:
CH05.554
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 4287578 | 4289352 | - | CH05.554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 62,521.37 Da | 46.45 | 75.80 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 71 | 109 | 0.0018 | IPR001810 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 461 | 520 | 3.3E-11 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 66 | 110 | 1.96E-6 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 452 | 521 | 7.06E-17 | IPR035979 |
| Gene3D | G3DSA:1.20.1280.50 | - | 73 | 114 | 3.9E-5 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 450 | 528 | 5.0E-16 | IPR012677 |
| SMART | SM00256 | fbox_2 | 33 | 73 | 5.2 | IPR001810 |
| SMART | SM00360 | rrm1_1 | 460 | 537 | 3.4E-15 | IPR000504 |
| SMART | SM00256 | fbox_2 | 76 | 117 | 3.2 | IPR001810 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 459 | 520 | 13.634825 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025805700.1 | uncharacterized protein LOC112884507 [Panicum hallii] | 2.35E-106 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 1.45E-10 | |
| TrEMBL | A0A368S0F0 | RRM domain-containing protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_7G275300v2 PE=4 SV=1 | 9.86E-183 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology