Basic Information
Locus ID:
CH05.511
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 3896342 | 3898029 | - | CH05.511 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 56,370.53 Da | 37.44 | 83.99 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 213 | 1.2E-18 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 403 | 474 | 7.7E-13 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 212 | 9.46E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 226 | 1.2E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 226 | 2.9E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 229 | 16.856802 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.49E-39 |
| RefSeq | XP_039798718.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 2.38E-274 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 1.22E-13 | |
| TrEMBL | A0A3L6RAZ4 | VWFA domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM06G11250 PE=4 SV=1 | 3.72E-274 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology