Basic Information
Locus ID:
CH05.509
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 3889706 | 3891355 | - | CH05.509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 52,105.67 Da | 35.93 | 81.73 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 216 | 5.0E-16 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 400 | 469 | 1.4E-12 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 217 | 1.15E-21 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 58 | 223 | 9.7E-30 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 228 | 2.1E-15 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 231 | 16.275656 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 358 | - | - |
| Coils | Coil | Coil | 374 | 394 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49665.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.15E-17 |
| RefSeq | XP_039798713.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 1.64E-227 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 1.14E-16 | |
| TrEMBL | A0A3L6SYT8 | VWFA domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM05G06950 PE=4 SV=1 | 1.05E-236 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology