halophFGD

Basic Information

Locus ID: CH05.477

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Leucine rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH05	3716161	3719381	-	CH05.477

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.62	111,645.70 Da	35.41	105.41	0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	217	275	1.3E-10	IPR001611
Pfam	PF13516	Leucine Rich repeat	192	207	1.1	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	716	1004	1.3E-40	IPR001245
Pfam	PF13855	Leucine rich repeat	476	533	1.1E-6	IPR001611
Pfam	PF13855	Leucine rich repeat	381	439	1.3E-8	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	700	1005	6.42E-70	IPR011009
SUPERFAMILY	SSF52058	L domain-like	88	372	6.91E-44	-
SUPERFAMILY	SSF52047	RNI-like	279	587	8.63E-54	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	215	308	7.5E-26	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	50	214	1.3E-24	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	309	614	1.4E-78	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	682	797	2.0E-17	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	798	1021	5.0E-55	-
SMART	SM00369	LRR_typ_2	498	521	48.0	IPR003591
SMART	SM00369	LRR_typ_2	192	216	74.0	IPR003591
SMART	SM00365	LRR_sd22_2	117	138	35.0	-
SMART	SM00365	LRR_sd22_2	544	570	190.0	-
SMART	SM00365	LRR_sd22_2	238	261	79.0	-
SMART	SM00365	LRR_sd22_2	262	291	320.0	-
SMART	SM00365	LRR_sd22_2	426	452	190.0	-
SMART	SM00365	LRR_sd22_2	168	194	340.0	-
SMART	SM00369	LRR_typ_2	568	590	110.0	IPR003591
SMART	SM00369	LRR_typ_2	544	567	22.0	IPR003591
SMART	SM00369	LRR_typ_2	426	449	6.8	IPR003591
SMART	SM00369	LRR_typ_2	117	140	1.9	IPR003591
SMART	SM00369	LRR_typ_2	168	191	130.0	IPR003591
SMART	SM00369	LRR_typ_2	262	286	24.0	IPR003591
SMART	SM00369	LRR_typ_2	238	261	3.5	IPR003591
SMART	SM00369	LRR_typ_2	450	474	9.4	IPR003591
SMART	SM00220	serkin_6	714	1006	3.8E-25	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	546	568	7.303818	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	119	140	7.711955	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	714	1013	35.156216	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	857	869	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	720	747	-	IPR017441
PRINTS	PR00019	Leucine-rich repeat signature	241	254	5.4E-6	-
PRINTS	PR00019	Leucine-rich repeat signature	544	557	5.4E-6	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G25930.1	Protein kinase family protein with leucine-rich repeat domain.	5.83E-97
RefSeq	XP_039798584.1	leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 [Panicum virgatum]	4.41E-279
Swiss-Prot	Q9M6A7	Leucine-rich repeat receptor-like kinase protein CLV1B OS=Glycine max OX=3847 GN=CLV1B PE=2 SV=1	4.4E-67
TrEMBL	A0A8T0TZI2	Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG073000 PE=4 SV=1	9.98E-278

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg23899, jg23902, jg23903, jg31658, jg32970, jg4549
Aizoaceae	Mesembryanthemum crystallinum	16	gene_12923, gene_12924, gene_13201, gene_13202, gene_13203 ... gene_13204, gene_13223, gene_13224, gene_13225, gene_8122, gene_8123, gene_8124, gene_8125, gene_8126, gene_8127, gene_8128
Amaranthaceae	Atriplex hortensis	3	Ah035058, Ah035062, Ah035064
Amaranthaceae	Beta vulgaris	4	BVRB_2g032780, BVRB_2g032790, BVRB_2g032800, BVRB_2g032810
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20913, Sbi_jg22871
Amaranthaceae	Salicornia europaea	1	Seu_jg16733
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00018166
Amaranthaceae	Suaeda glauca	2	Sgl62289, Sgl66836
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000018127, gene:ENSEOMG00000018775 ... gene:ENSEOMG00000019088, gene:ENSEOMG00000019717, gene:ENSEOMG00000020085, gene:ENSEOMG00000047937, gene:ENSEOMG00000049253, gene:ENSEOMG00000051765
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2AG0015020, CQ.Regalona.r1.2AG0015040 ... CQ.Regalona.r1.2AG0015050, CQ.Regalona.r1.2BG0017130, CQ.Regalona.r1.2BG0017140, CQ.Regalona.r1.2BG0017150, CQ.Regalona.r1.2BG0017160
Anacardiaceae	Pistacia vera	12	pistato.v30168210, pistato.v30168230, pistato.v30254050 ... pistato.v30254070, pistato.v30254100, pistato.v30254130, pistato.v30257250, pistato.v30257260, pistato.v30257300, pistato.v30257330, pistato.v30257340, pistato.v30257350
Apiaceae	Apium graveolens	5	Ag7G00332, Ag7G01921, Ag8G00329, Ag9G01447, Ag9G02626
Arecaceae	Cocos nucifera	6	COCNU_02G001660, COCNU_03G014930, COCNU_06G004330 ... COCNU_06G004340, COCNU_14G002970, scaffold017116G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103698393, gene-LOC103700466, gene-LOC103706753 ... gene-LOC103710231, gene-LOC120112395
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.2682.V1.1, AsparagusV1_06.1208.V1.1 ... AsparagusV1_06.1209.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G22916, Ftri15G06208, Ftri16G03105, Ftri7G05435
Brassicaceae	Arabidopsis thaliana	1	AT5G25930.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003585m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g21740.v2.2
Brassicaceae	Brassica nigra	4	BniB02g078280.2N, BniB02g078290.2N, BniB02g078300.2N ... BniB04g004140.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0058, Ceq01G0062, Ceq03G0037, Ceq03G0038, Ceq03G0039 ... Ceq03G0040, Ceq04G2063, Ceq06G0067, Ceq06G1562
Casuarinaceae	Casuarina glauca	6	Cgl01G0022, Cgl03G0046, Cgl04G2257, Cgl06G0074, Cgl06G1619 ... Cgl06G1621
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g02450, gene.Cymno16g03820
Dunaliellaceae	Dunaliella salina	1	Dusal.0324s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate07g16860, gene.Thate09g16420, gene.Thate09g16430
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-252
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1159, evm.TU.LG07.840
Plantaginaceae	Plantago ovata	2	Pov_00003450, Pov_00013571
Plumbaginaceae	Limonium bicolor	6	Lb1G04714, Lb1G04727, Lb1G05171, Lb1G05195, Lb2G14154 ... Lb3G21111
Poaceae	Echinochloa crus-galli	22	AH02.3138, AH02.3139, AH05.1684, AH05.360, AH06.2008 ... AH06.2009, AH06.2296, AH07.1041, BH01.5239, BH02.3203, BH02.3204, BH05.1831, BH05.417, BH06.1839, BH07.3954, CH02.3314, CH02.3317, CH05.1927, CH05.477, CH06.2028, CH07.766, CH07.939
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_1AG0032710, gene-QOZ80_1BG0082870 ... gene-QOZ80_2AG0106610, gene-QOZ80_2AG0107050, gene-QOZ80_2AG0108010, gene-QOZ80_2BG0160680, gene-QOZ80_2BG0161640, gene-QOZ80_4AG0303360, gene-QOZ80_4BG0334250, gene-QOZ80_4BG0334280, gene-QOZ80_5AG0366080, gene-QOZ80_5AG0383890, gene-QOZ80_5BG0413900, gene-QOZ80_5BG0430690, gene-QOZ80_5BG0449760, gene-QOZ80_6AG0542820, gene-QOZ80_6AG0542830, gene-QOZ80_6BG0496020, gene-QOZ80_6BG0496030
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0006720.1.CDS1 ... HORVU.MOREX.r3.1HG0006740.1.CDS1, HORVU.MOREX.r3.1HG0006770.1.CDS1, HORVU.MOREX.r3.1HG0076630.1, HORVU.MOREX.r3.3HG0287850.1, HORVU.MOREX.r3.6HG0580210.1, HORVU.MOREX.r3.6HG0624460.1, HORVU.MOREX.r3.7HG0637550.1.CDS1, HORVU.MOREX.r3.7HG0648000.1, HORVU.MOREX.r3.7HG0673710.1, HORVU.MOREX.r3.7HG0718040.1
Poaceae	Lolium multiflorum	5	gene-QYE76_015921, gene-QYE76_015986, gene-QYE76_034443 ... gene-QYE76_034447, gene-QYE76_055320
Poaceae	Oryza coarctata	12	Oco02G020350, Oco03G005860, Oco03G006080, Oco04G006080 ... Oco04G006330, Oco04G006340, Oco09G014620, Oco10G014600, Oco11G011100, Oco12G011190, Oco12G011200, Oco12G011210
Poaceae	Oryza sativa	10	LOC_Os01g53920.1, LOC_Os02g12910.1, LOC_Os02g13420.1 ... LOC_Os02g13430.1, LOC_Os02g13460.1, LOC_Os02g13510.1, LOC_Os05g44770.1, LOC_Os06g36270.3, LOC_Os06g36310.1, LOC_Os06g36320.1
Poaceae	Paspalum vaginatum	12	gene-BS78_03G271900, gene-BS78_03G272000, gene-BS78_K050100 ... gene-BS78_04G094300, gene-BS78_04G105500, gene-BS78_07G030600, gene-BS78_08G053400, gene-BS78_08G053600, gene-BS78_08G123500, gene-BS78_09G207700, gene-BS78_10G165200, gene-BS78_10G165300
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0102051, Pt_Chr0102884, Pt_Chr0400441, Pt_Chr0400452 ... Pt_Chr0504113, Pt_Chr0600213, Pt_Chr0602247, Pt_Chr0602287, Pt_Chr0605380
Poaceae	Sporobolus alterniflorus	10	Chr02G028940, Chr03G015800, Chr05G006600, Chr05G023380 ... Chr08G015900, Chr0G009790, Chr10G009440, Chr15G023290, Chr18G014300, Chr22G003240
Poaceae	Thinopyrum elongatum	5	Tel3E01G455700, Tel5E01G585000, Tel7E01G173400 ... Tel7E01G625700, Telscf48801G000100
Poaceae	Triticum dicoccoides	13	gene_TRIDC1AG050590, gene_TRIDC1BG057420 ... gene_TRIDC2BG000240, gene_TRIDC3AG021220, gene_TRIDC3AG041020, gene_TRIDC3BG046270, gene_TRIDC4AG060560, gene_TRIDC5BG057730, gene_TRIDC6AG027350, gene_TRIDC6AG053870, gene_TRIDC6BG033510, gene_TRIDC7AG049870, gene_TRIDC7BG043940
Poaceae	Triticum aestivum	28	TraesCS1A02G342600.1, TraesCS1B02G355700.1 ... TraesCS1D02G344700.1, TraesCS2A02G001700.1.cds1, TraesCS2B02G021400.1.cds1, TraesCS3A02G276200.2, TraesCS3B02G309900.1, TraesCS3B02G310000.1, TraesCS3D02G276100.1, TraesCS3D02G276200.2, TraesCS4A02G380300.2, TraesCS4A02G381100.1, TraesCS6A02G187400.1, TraesCS6A02G359600.2, TraesCS6B02G217100.1, TraesCS6B02G392500.1, TraesCS6D02G174300.1, TraesCS6D02G342500.1, TraesCS6D02G342600.1.cds1, TraesCS7A02G028300.1.cds1, TraesCS7A02G082600.1, TraesCS7A02G356900.1, TraesCS7B02G270900.1, TraesCS7D02G077200.1, TraesCS7D02G365800.1, TraesCSU02G101700.1.cds1, TraesCSU02G175600.1, TraesCSU02G214400.1
Poaceae	Zea mays	7	Zm00001eb083330_P001, Zm00001eb153630_P001 ... Zm00001eb204350_P002, Zm00001eb239600_P001, Zm00001eb277420_P001, Zm00001eb293660_P001, Zm00001eb384580_P002
Poaceae	Zoysia japonica	5	nbis-gene-13874, nbis-gene-22917, nbis-gene-34193 ... nbis-gene-41200, nbis-gene-41201
Poaceae	Zoysia macrostachya	7	Zma_g15394, Zma_g15433, Zma_g20487, Zma_g24841, Zma_g27250 ... Zma_g32940, Zma_g8624
Portulacaceae	Portulaca oleracea	10	evm.TU.LG07.719, evm.TU.LG07.720, evm.TU.LG07.722 ... evm.TU.LG07.724, evm.TU.LG07.725, evm.TU.LG15.212, evm.TU.LG15.213, evm.TU.LG15.215, evm.TU.LG15.216, evm.TU.LG15.217
Posidoniaceae	Posidonia oceanica	4	gene.Posoc08g12490, gene.Posoc08g12500, gene.Posoc09g06650 ... gene.Posoc09g06660
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.752, evm.TU.Scaffold_4_RagTag.1896
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13739, nbisL1-mrna-13742
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14173
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-4670, nbisL1-mrna-8996
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.1081, evm.TU.utg000033l.526
Rhizophoraceae	Kandelia obovata	2	Maker00001236, Maker00015187
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-22721, nbisL1-mrna-3859
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1181, nbisL1-mrna-7972
Salicaceae	Populus euphratica	12	populus_peu04986, populus_peu04987, populus_peu05355 ... populus_peu05356, populus_peu05357, populus_peu05367, populus_peu05368, populus_peu05369, populus_peu05371, populus_peu05381, populus_peu05382, populus_peu12719
Solanaceae	Lycium barbarum	12	gene-LOC132599916, gene-LOC132600349, gene-LOC132600351 ... gene-LOC132635782, gene-LOC132635834, gene-LOC132635843, gene-LOC132636645, gene-LOC132636830, gene-LOC132636831, gene-LOC132636834, gene-LOC132637392, gene-LOC132637398
Solanaceae	Solanum chilense	3	SOLCI004927300, SOLCI005823900, SOLCI006937100
Solanaceae	Solanum pennellii	4	gene-LOC107007675, gene-LOC107027903, gene-LOC107028118 ... gene-LOC107028124
Tamaricaceae	Reaumuria soongarica	1	STRG.4720_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC01G2578
Zosteraceae	Zostera marina	4	Zosma04g09240.v3.1, Zosma05g13120.v3.1, Zosma05g13230.v3.1 ... Zosma05g13270.v3.1