Basic Information
Locus ID:
CH05.4531
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 52265367 | 52268459 | + | CH05.4531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 45,003.46 Da | 46.29 | 70.79 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 208 | 252 | 4.66481E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 209 | 255 | 1.0E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 257 | 1.75E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 264 | 7.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 210 | 250 | 8.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 210 | 251 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 225 | 234 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 101 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 2.31E-71 |
| RefSeq | XP_022681228.1 | E3 ubiquitin-protein ligase RNF5 isoform X1 [Setaria italica] | 6.98E-147 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 3.3E-29 | |
| TrEMBL | K3Z8Z7 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101782523 PE=4 SV=1 | 1.58E-145 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology