Basic Information
Locus ID:
CH05.4492
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51948377 | 51951439 | - | CH05.4492 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 57,216.44 Da | 52.21 | 79.75 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13456 | Reverse transcriptase-like | 64 | 161 | 6.4E-9 | IPR002156 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 262 | 332 | 4.8E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 352 | 401 | 8.3E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 272 | 4.29E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 274 | 336 | 1.09E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 345 | 408 | 1.25E-13 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 49 | 182 | 1.8E-5 | IPR036397 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 270 | 3.1E-14 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 330 | 455 | 1.6E-14 | - |
| SMART | SM00184 | ring_2 | 193 | 239 | 3.5E-4 | IPR001841 |
| SMART | SM00184 | ring_2 | 362 | 403 | 13.0 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 260 | 332 | 1.0E-9 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 342 | 401 | 0.091 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 189 | 407 | 26.671679 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 240 | 10.851695 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 210 | 219 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19670.1 | RING/U-box superfamily protein. | 1.48E-174 |
| RefSeq | XP_025809603.1 | ATP-dependent RNA helicase DEAH12, chloroplastic [Panicum hallii] | 0 |
| Q9SKC4 | Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana OX=3702 GN=ARI10 PE=2 SV=1 | 4.87E-19 | |
| TrEMBL | A0A3L6RA68 | RBR-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM06G34960 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg20879, jg20880, jg22388 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5018 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029577 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g105360, BVRB_7g163120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16124, Sbi_jg56771 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24628 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007042, gene:ENSEOMG00000034169 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0015650, CQ.Regalona.r1.7BG0019060 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30078190 |
| Apiaceae | Apium graveolens | 2 | Ag6G01200, AgUnG00396 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G019060 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719299 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.101.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G06246, Ftri18G29723 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19670.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024888m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g071270.2N, BniB05g016750.2N, BniB07g009220.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g03630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g15740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-852 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.188 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012939 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G29893, Lb6G31154, Lb6G31779 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4183, BH05.4260, CH05.4492 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399190, gene-QOZ80_5BG0447880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0422080.1 |
| Poaceae | Oryza coarctata | 2 | Oco23G011040, Oco24G010840 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g43560.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G165200, gene-BS78_K301400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704696 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G019720, Chr06G020660, Chr19G007170, Chr27G009720 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G035800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG002400, gene_TRIDC5BG002230 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G015900.1, TraesCS5B02G014200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb032750_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44433, nbis-gene-47436 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25396, Zma_g26186 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g09280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1069 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16921 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15946 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17351 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.185 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8576 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23052 |
| Salicaceae | Populus euphratica | 2 | populus_peu29054, populus_peu30447 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011703 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24190.v3.1 |