Basic Information
Locus ID:
CH05.4479
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51729089 | 51729608 | - | CH05.4479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 15,980.63 Da | 39.22 | 60.50 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 27 | 160 | 7.96503E-61 | - |
| Pfam | PF00314 | Thaumatin family | 25 | 120 | 3.2E-29 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 24 | 160 | 4.32E-45 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 15 | 160 | 4.1E-42 | IPR037176 |
| SMART | SM00205 | tha2 | 27 | 160 | 5.1E-22 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 40 | 0.087 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 126 | 160 | 0.011 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 15 | 135 | 1.0E-33 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 34 | 160 | 29.636633 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 150 | 159 | 1.5E-34 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 102 | 118 | 1.5E-34 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 33 | 42 | 1.5E-34 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 55 | 66 | 1.5E-34 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 67 | 96 | 1.5E-34 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 5.7E-25 |
| RefSeq | XP_002443621.1 | thaumatin-like protein [Sorghum bicolor] | 1.48E-89 |
| P50697 | Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa OX=4498 GN=RASTL-3 PE=2 SV=1 | 2.57E-75 | |
| TrEMBL | A0A811R9K3 | Thaumatin-like protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50025 PE=4 SV=1 | 1.19E-92 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology