Basic Information
Locus ID:
CH05.4475
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51715701 | 51716225 | - | CH05.4475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.39 | 17,730.40 Da | 28.02 | 61.21 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09217 | TLP-P | 26 | 173 | 3.65013E-71 | - |
| Pfam | PF00314 | Thaumatin family | 30 | 146 | 1.4E-33 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 23 | 173 | 6.93E-55 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 24 | 144 | 1.5E-45 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 145 | 174 | 4.0E-5 | IPR037176 |
| SMART | SM00205 | tha2 | 26 | 174 | 4.3E-39 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 1 | 148 | 6.5E-46 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 143 | 174 | 8.4E-5 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 23 | 174 | 35.427231 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 66 | 77 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 25 | 37 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 45 | 54 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 78 | 107 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 115 | 131 | 1.4E-42 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 164 | 173 | 1.4E-42 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 4.66E-36 |
| RefSeq | XP_025805003.1 | thaumatin-like pathogenesis-related protein 3 [Panicum hallii] | 1.76E-105 |
| P50698 | Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa OX=4498 GN=RASTL-4 PE=2 SV=1 | 1.21E-79 | |
| TrEMBL | A0A1E5WG20 | Thaumatin-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002686 PE=4 SV=1 | 5.71E-113 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology