Basic Information
Locus ID:
CH05.4474
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Thaumatin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51701017 | 51701538 | + | CH05.4474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 18,051.09 Da | 37.89 | 71.68 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 30 | 132 | 1.5E-28 | IPR001938 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 23 | 173 | 3.01E-44 | IPR037176 |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 24 | 173 | 9.6E-43 | IPR037176 |
| SMART | SM00205 | tha2 | 26 | 173 | 1.0E-27 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 138 | 173 | 0.023 | IPR001938 |
| PIRSF | PIRSF002703 | PR5 | 2 | 148 | 1.6E-40 | IPR001938 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 23 | 173 | 29.008316 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 80 | 95 | - | IPR017949 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 45 | 54 | 1.5E-35 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 114 | 130 | 1.5E-35 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 163 | 172 | 1.5E-35 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 25 | 37 | 1.5E-35 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 67 | 78 | 1.5E-35 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 80 | 109 | 1.5E-35 | IPR001938 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11650.1 | osmotin 34. osmotin-like protein | 4.48E-29 |
| RefSeq | XP_002443619.1 | thaumatin-like protein [Sorghum bicolor] | 5.63E-75 |
| P31110 | Thaumatin-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0628600 PE=1 SV=1 | 6.15E-72 | |
| TrEMBL | A0A1E5UTR7 | Thaumatin-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022729 PE=4 SV=1 | 2.5E-91 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology