Basic Information
Locus ID:
CH05.4462
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51600313 | 51603932 | - | CH05.4462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 76,407.58 Da | 53.07 | 52.74 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 284 | 325 | 6.09464E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 42 | 3.2E-5 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 348 | 1.96E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 66 | 4.4E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 355 | 2.2E-11 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 4 | 75 | 1.3E-12 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 2.6E-19 |
| RefSeq | XP_025805389.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like isoform X1 [Panicum hallii] | 6.6E-245 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 3.14E-18 | |
| TrEMBL | A0A2S3HFM0 | DWNN domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G505800 PE=4 SV=1 | 1.49E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||