Basic Information
Locus ID:
CH05.4432
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 51184711 | 51193339 | + | CH05.4432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 119,085.88 Da | 51.76 | 76.59 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 883 | 1047 | 1.33418E-66 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 451 | 1046 | 1.7E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 449 | 1048 | 2.75E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 434 | 655 | 5.4E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 742 | 1057 | 2.7E-57 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 451 | 1049 | 55.925041 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 452 | 467 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 991 | 1008 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 792 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 212 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 1.51E-280 |
| RefSeq | XP_004963176.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Setaria italica] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 1.45E-279 | |
| TrEMBL | A0A368QNL8 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_3G388400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology