Basic Information
Locus ID:
CH05.4390
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 50508857 | 50530023 | + | CH05.4390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.64 | 248,584.59 Da | 57.35 | 69.98 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 1977 | 2013 | 0.012 | IPR001680 |
| Pfam | PF00722 | Glycosyl hydrolases family 16 | 493 | 580 | 4.9E-15 | IPR000757 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 493 | 577 | 3.41E-15 | IPR013320 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1943 | 2238 | 1.22E-31 | IPR036322 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 16 | 224 | 2.04E-6 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 6 | 229 | 5.0E-5 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 487 | 594 | 2.4E-16 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 2139 | 2268 | 2.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1934 | 2121 | 4.0E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2148 | 2185 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2016 | 2058 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2188 | 2235 | 0.0037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1974 | 2013 | 1.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1981 | 2022 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2219 | 2238 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1981 | 2014 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 2162 | 2194 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 2222 | 2236 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1840 | 1855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1829 | 1855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1389 | 1405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 973 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1376 | 1407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 938 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65030.1 | Transducin/WD40 repeat-like superfamily protein. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 3.75E-89 |
| RefSeq | XP_025808886.1 | p21-activated protein kinase-interacting protein 1-like [Panicum hallii] | 1.27E-196 |
| TrEMBL | A0A2T7EJC5 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G473500 PE=4 SV=1 | 1.49E-195 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22291 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20162 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27173, Sbi_jg33373 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8059 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005731 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71280, Sgl74873 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006937, gene:ENSEOMG00000037699 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0008130, CQ.Regalona.r1.7AG0018330 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30258690, pistato.v30258950 |
| Apiaceae | Apium graveolens | 1 | Ag8G00760 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020170, COCNU_14G008620 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710520 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3436.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G03450 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G65030.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10018816m.g.v1.0, Thhalv10019798m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22530.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g044750.2N, BniB05g064080.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq04G0184, Ceq04G0193, Ceq04G0200 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0273, Cgl04G0281 |
| Cymodoceaceae | Cymodocea nodosa | 4 | gene.Cymno17g04390, gene.Cymno17g04420, gene.Cymno17g04430 ... |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0005s00040.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g11660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4678 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2775, evm.TU.LG03.1339 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008761 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00071 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.4071, BH05.4168, CH05.4390, Contig1909.2 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0398100, gene-QOZ80_5BG0446700 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0427150.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000969 |
| Poaceae | Oryza coarctata | 2 | Oco23G010510, Oco24G010350 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g42150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G149600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704480, Pt_Chr0704505 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G019190, Chr19G007570, Chr27G009140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G081100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG004920, gene_TRIDC5BG005520 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G033600.1, TraesCS5B02G033700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb328580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47500 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26137 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1615 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g35080, gene.Posoc02g23370, gene.Posoc04g15110 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.925, evm.TU.Scaffold_16_RagTag.843 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25000 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12987 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19209 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.73 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016099 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-70 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10305 |
| Salicaceae | Populus euphratica | 1 | populus_peu30363 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645512 |
| Solanaceae | Solanum chilense | 1 | SOLCI002446300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008933 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16786 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1062 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23590.v3.1 |