Basic Information
Locus ID:
CH05.4383
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 50441398 | 50444002 | + | CH05.4383 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 78,577.52 Da | 32.27 | 88.66 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 252 | 290 | 3.29026E-5 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 94 | 5.2E-10 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 383 | 656 | 1.5E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 362 | 660 | 9.99E-75 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 249 | 301 | 2.63E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 456 | 678 | 4.4E-49 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 206 | 301 | 4.4E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 352 | 455 | 2.7E-30 | - |
| SMART | SM00181 | egf_5 | 255 | 301 | 0.22 | IPR000742 |
| SMART | SM00179 | egfca_6 | 252 | 301 | 1.4E-8 | IPR001881 |
| SMART | SM00220 | serkin_6 | 380 | 661 | 4.6E-34 | IPR000719 |
| SMART | SM00181 | egf_5 | 207 | 251 | 0.39 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 380 | 661 | 35.368229 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 501 | 513 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 386 | 409 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 252 | 285 | - | IPR018097 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 8.98E-129 |
| RefSeq | XP_004963217.1 | wall-associated receptor kinase 2 [Setaria italica] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 8.69E-128 | |
| TrEMBL | A0A4U6VLD8 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G409900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology