Basic Information
Locus ID:
CH05.4370
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 50263959 | 50267160 | + | CH05.4370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 91,232.90 Da | 56.40 | 86.76 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 55 | 6.9E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 59 | 1.44E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 433 | 484 | 1.07E-6 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 64 | 1.8E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002442530.1 | uncharacterized protein LOC8084401 [Sorghum bicolor] | 1.05E-162 |
| TrEMBL | A0A811RA45 | F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS50206 PE=4 SV=1 | 2.46E-167 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH05.4050, AH05.4051, BH02.1064, BH05.4152, CH05.4370 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0397900, gene-QOZ80_5AG0397910 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G015920, Chr04G018650, Chr04G019030, Chr06G016670 ... |