Basic Information
Locus ID:
CH05.4340
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 49992256 | 49997991 | + | CH05.4340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 113,986.22 Da | 56.74 | 74.88 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 419 | 459 | 2.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 420 | 471 | 4.97E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 419 | 461 | 4.8E-6 | - |
| SMART | SM00256 | fbox_2 | 421 | 462 | 6.9E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 415 | 462 | 9.073559 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 224 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034585161.1 | uncharacterized protein LOC117847966 [Setaria viridis] | 4.09E-219 |
| TrEMBL | A0A4U6VMK3 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G401800v2 PE=4 SV=1 | 9.25E-218 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology