Basic Information
Locus ID:
CH05.4270
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 49308665 | 49312139 | - | CH05.4270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 29,121.71 Da | 60.23 | 67.96 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 270 | 1.1E-87 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 154 | 260 | 7.65E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 158 | 273 | 1.0E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 162 | 261 | 24.618954 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 1.15E-82 |
| RefSeq | XP_025809974.1 | auxin-responsive protein IAA30-like [Panicum hallii] | 3.44E-120 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 4.74E-105 | |
| TrEMBL | A0A2T7EIY9 | Auxin-responsive protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G463500 PE=3 SV=1 | 7.79E-119 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology