Basic Information
Locus ID:
CH05.4231
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 48953328 | 48958489 | - | CH05.4231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 115,421.12 Da | 39.69 | 89.31 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17681 | Gamma tubulin complex component N-terminal | 49 | 365 | 3.2E-23 | IPR041470 |
| Pfam | PF04130 | Gamma tubulin complex component C-terminal | 706 | 1013 | 1.2E-70 | IPR040457 |
| Gene3D | G3DSA:1.20.120.1900 | - | 706 | 1012 | 4.2E-70 | IPR042241 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80260.1 | Spc97 / Spc98 family of spindle pole body (SBP) component. | 2.91E-298 |
| RefSeq | XP_034587988.1 | gamma-tubulin complex component 5-like isoform X1 [Setaria viridis] | 0 |
| Q8BKN5 | Gamma-tubulin complex component 5 OS=Mus musculus OX=10090 GN=Tubgcp5 PE=2 SV=2 | 4.13E-28 | |
| TrEMBL | A0A4U6VLB9 | Gamma-tubulin complex component OS=Setaria viridis OX=4556 GN=SEVIR_3G393000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7871 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033631 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g037780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19647, Sbi_jg44531 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17386 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024054 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63710, Sgl68212 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017941, gene:ENSEOMG00000019887 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009930, CQ.Regalona.r1.2BG0011830 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045720 |
| Apiaceae | Apium graveolens | 1 | Ag4G02784 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711564 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2198.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G31670 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G20570.1, AT1G80260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35550.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075930.2N, BniB06g051610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2315 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2453 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g06810 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g11110 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.479 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010714 |
| Poaceae | Echinochloa crus-galli | 2 | AH05.3942, CH05.4231 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0396590 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0320590.1, HORVU.MOREX.r3.5HG0434250.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000616 |
| Poaceae | Oryza coarctata | 1 | Oco03G011280 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g32340.1, LOC_Os12g41290.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G131200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704237 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G018430, Chr06G019180, Chr19G008180, Chr19G008190 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G129000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009230, gene_TRIDC5BG010890 |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G096700.1, TraesCS5A02G059900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb327280_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30485 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26069 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1448, evm.TU.LG05.1973 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.915 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25100 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18901 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19276 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.27 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016048 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-25 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10240 |
| Salicaceae | Populus euphratica | 1 | populus_peu26580 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627910 |
| Solanaceae | Solanum chilense | 1 | SOLCI005181200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018031 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16546 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0635 |
| Zosteraceae | Zostera marina | 1 | Zosma04g19690.v3.1 |