Basic Information
Locus ID:
CH05.4229
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CBL3
Description:
calcium ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 48926837 | 48938541 | + | CH05.4229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 114,856.67 Da | 57.24 | 81.87 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 891 | 940 | 7.37566E-6 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 892 | 937 | 0.0027 | IPR002048 |
| Pfam | PF08320 | PIG-X / PBN1 | 336 | 462 | 6.5E-14 | IPR013233 |
| Pfam | PF13499 | EF-hand domain pair | 950 | 1017 | 4.4E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 861 | 1033 | 4.01E-45 | IPR011992 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 98 | 3.21E-8 | IPR036322 |
| Gene3D | G3DSA:1.10.238.10 | - | 860 | 1036 | 1.2E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 97 | 3.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 25 | 65 | 7.3E-4 | IPR001680 |
| SMART | SM00054 | efh_1 | 951 | 979 | 5.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 914 | 942 | 1.6 | IPR002048 |
| SMART | SM00054 | efh_1 | 995 | 1023 | 0.83 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 910 | 945 | 11.807551 | IPR002048 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 33 | 67 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 947 | 982 | 10.719631 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 991 | 1026 | 11.500702 | IPR002048 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 52 | 66 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04370 (VEGF signaling pathway)
map04370 (VEGF signaling pathway)
map04650 (Natural killer cell mediated cytotoxicity)
map04658 (Th1 and Th2 cell differentiation)
map04659 (Th17 cell differentiation)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26570.1 | calcineurin B-like 3. member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins) | 2.52E-114 |
| RefSeq | XP_039802693.1 | phosphatidylinositol-glycan biosynthesis class X protein-like [Panicum virgatum] | 2.33E-132 |
| Q3HRP5 | Calcineurin B-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBL2 PE=2 SV=1 | 1.12E-129 | |
| TrEMBL | J3NEP5 | Calcineurin B-like protein OS=Oryza brachyantha OX=4533 PE=3 SV=1 | 6.67E-168 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4974 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15044 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015347 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25358, Sbi_jg9210 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19378 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011148 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41797, Sgl46597 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011370, gene:ENSEOMG00000033746 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014340, CQ.Regalona.r1.8BG0015720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30029730 |
| Apiaceae | Apium graveolens | 2 | Ag6G00813, Ag7G00520 |
| Arecaceae | Cocos nucifera | 1 | scaffold080831G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707324, gene-LOC103721745, gene-LOC103723332 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.328.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22485 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G46850.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000976m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g11650.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g063500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0284 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0297 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g01720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0698s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g08050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.816 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003041 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32187 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3940, BH05.4031, CH05.4229 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396560, gene-QOZ80_5BG0444830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0436640.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000644, gene-QYE76_054345 |
| Poaceae | Oryza coarctata | 2 | Oco23G009720, Oco24G009430 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G130900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0603304, Pt_Chr0704233, Pt_Chr0704598 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018400, Chr06G019140, Chr19G008210, Chr27G008430 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G502700, Tel5E01G130100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1BG052420, gene_TRIDC5AG009520 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G322700.1, TraesCS1D02G311200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44613 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25276 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3015, evm.TU.LG16.594 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g03910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.505 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7358 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17738 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22136 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.203 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3337 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6397 |
| Salicaceae | Populus euphratica | 2 | populus_peu03217, populus_peu34066 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635326 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028800 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13995 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18350.v3.1 |