halophFGD

Basic Information

Locus ID: CH05.4223

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Protein DA1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH05	48894703	48902340	+	CH05.4223

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.84	73,286.35 Da	57.30	76.27	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09396	LIM_DA1	289	341	5.4197E-30	-
Pfam	PF12315	Protein DA1	438	648	4.8E-98	IPR022087
Pfam	PF02809	Ubiquitin interaction motif	194	209	0.0047	IPR003903
Pfam	PF02809	Ubiquitin interaction motif	226	239	0.63	IPR003903
Pfam	PF00412	LIM domain	289	343	5.0E-12	IPR001781
SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	283	314	5.86E-7	-
SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	315	373	1.43E-10	-
Gene3D	G3DSA:2.10.110.10	Cysteine Rich Protein	282	363	1.3E-18	-
SMART	SM00132	lim_4	288	340	1.1E-16	IPR001781
SMART	SM00726	uim	194	213	1.4	IPR003903
SMART	SM00726	uim	226	245	0.078	IPR003903
ProSiteProfiles	PS50330	Ubiquitin-interacting motif (UIM) domain profile.	226	245	10.074227	IPR003903
ProSiteProfiles	PS50023	LIM domain profile.	287	347	13.0582	IPR001781
ProSitePatterns	PS00478	LIM zinc-binding domain signature.	289	323	-	IPR001781

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G36860.1	LIM domain-containing protein.	1.18E-193
RefSeq	XP_039840055.1	protein DA1-related 1-like isoform X1 [Panicum virgatum]	0
Swiss-Prot	Q8W4F0	Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3	1.13E-192
TrEMBL	A0A8T0VAX0	LIM zinc-binding domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG564600 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10623, jg11922, jg22828, jg2631, jg30622, jg34192, jg40110 ... jg6287
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16525, gene_22660, gene_24209
Amaranthaceae	Atriplex hortensis	3	Ah012129, Ah026615, Ah035189
Amaranthaceae	Beta vulgaris	2	BVRB_2g025600, BVRB_6g138060
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21312, Sbi_jg22542, Sbi_jg37755, Sbi_jg5903
Amaranthaceae	Salicornia europaea	2	Seu_jg16426, Seu_jg28089
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00013462, GOSA_00016367
Amaranthaceae	Suaeda glauca	4	Sgl34668, Sgl40091, Sgl62524, Sgl67069
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003216, gene:ENSEOMG00000003533 ... gene:ENSEOMG00000017789, gene:ENSEOMG00000020545, gene:ENSEOMG00000025857, gene:ENSEOMG00000049558
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1BG0018880, CQ.Regalona.r1.6AG0018230 ... CQ.Regalona.r1.6BG0019310
Anacardiaceae	Pistacia vera	2	pistato.v30207290, pistato.v30207310
Apiaceae	Apium graveolens	3	Ag10G01205, Ag2G00299, Ag5G00785
Arecaceae	Cocos nucifera	4	COCNU_04G001220, COCNU_05G000270, COCNU_06G019940 ... COCNU_14G010110
Arecaceae	Phoenix dactylifera	4	gene-LOC103704117, gene-LOC103712297, gene-LOC103720783 ... gene-LOC103723948
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.806.V1.1, AsparagusV1_05.277.V1.1 ... AsparagusV1_05.288.V1.1, AsparagusV1_08.1510.V1.1, AsparagusV1_09.491.V1.1
Asteraceae	Flaveria trinervia	7	Ftri16G12586, Ftri17G08511, Ftri17G22968, Ftri18G08564 ... Ftri6G20063, Ftri9G14359, Ftri9G20232
Brassicaceae	Arabidopsis thaliana	7	AT1G19270.1, AT2G39830.1, AT4G36860.1, AT5G66610.2 ... AT5G66620.1, AT5G66630.1, AT5G66640.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10003845m.g.v1.0, Thhalv10007382m.g.v1.0 ... Thhalv10016501m.g.v1.0, Thhalv10024819m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g17180.v2.2, Sp2g30060.v2.2, Sp2g30080.v2.2 ... Sp4g22110.v2.2, Sp7g34510.v2.2
Brassicaceae	Brassica nigra	13	BniB02g062500.2N, BniB03g008130.2N, BniB04g011540.2N ... BniB04g033870.2N, BniB05g001980.2N, BniB06g005010.2N, BniB06g015480.2N, BniB07g018540.2N, BniB07g044230.2N, BniB07g044240.2N, BniB07g044260.2N, BniB07g044270.2N, BniB08g025620.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G1171, Ceq03G0232, Ceq03G1652, Ceq05G0718
Casuarinaceae	Casuarina glauca	3	Cgl02G1212, Cgl03G1773, Cgl05G0726
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g15020, gene.Cymno02g18860, gene.Cymno02g18870 ... gene.Cymno11g03310
Dunaliellaceae	Dunaliella salina	1	Dusal.0034s00023.v1.0
Hydrocharitaceae	Thalassia testudinum	11	gene.Thate02g21720, gene.Thate02g24920, gene.Thate02g30700 ... gene.Thate03g05160, gene.Thate03g09900, gene.Thate04g15030, gene.Thate04g15710, gene.Thate06g24850, gene.Thate06g24860, gene.Thate08g05710, gene.Thate11g00170
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-1302, nbisL1-mrna-3970, nbisL1-mrna-6603
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1790, evm.TU.LG02.1793, evm.TU.LG02.2261 ... evm.TU.LG06.528
Plantaginaceae	Plantago ovata	6	Pov_00011934, Pov_00026787, Pov_00029368, Pov_00029387 ... Pov_00035779, Pov_00038792
Plumbaginaceae	Limonium bicolor	8	Lb1G03179, Lb1G03184, Lb1G05547, Lb3G21108, Lb4G25853 ... Lb5G27939, Lb6G29882, Lb6G32410
Poaceae	Echinochloa crus-galli	9	AH01.1193, AH01.4223, AH05.3937, BH01.4529, BH05.3570 ... BH05.4026, BH06.596, CH01.4829, CH05.4223
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_3AG0224060, gene-QOZ80_3AG0225840 ... gene-QOZ80_3AG0242390, gene-QOZ80_3BG0269080, gene-QOZ80_3BG0270650, gene-QOZ80_3BG0285760, gene-QOZ80_5AG0396550, gene-QOZ80_5BG0444820, gene-QOZ80_6AG0511220, gene-QOZ80_6BG0463240
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0097600.1, HORVU.MOREX.r3.4HG0341060.1 ... HORVU.MOREX.r3.4HG0389200.1, HORVU.MOREX.r3.5HG0436650.1
Poaceae	Lolium multiflorum	5	gene-QYE76_000601, gene-QYE76_000639, gene-QYE76_014508 ... gene-QYE76_062966, gene-QYE76_069066
Poaceae	Oryza coarctata	7	Oco05G009190, Oco05G018430, Oco06G009550, Oco11G003810 ... Oco12G003800, Oco23G009710, Oco24G009420
Poaceae	Oryza sativa	4	LOC_Os03g16090.1, LOC_Os03g42820.2, LOC_Os06g08400.1 ... LOC_Os12g40490.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G150000, gene-BS78_01G405200, gene-BS78_K146400 ... gene-BS78_05G099200, gene-BS78_05G283000, gene-BS78_08G130100, gene-BS78_10G065100
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0102206, Pt_Chr0102246, Pt_Chr0102256, Pt_Chr0104431 ... Pt_Chr0300465, Pt_Chr0300492, Pt_Chr0704232
Poaceae	Sporobolus alterniflorus	14	Chr01G009320, Chr01G009900, Chr01G030720, Chr04G007490 ... Chr04G018390, Chr04G024920, Chr06G019130, Chr07G004140, Chr07G023750, Chr11G021510, Chr12G008900, Chr12G027060, Chr12G027780, Chr12G027790
Poaceae	Thinopyrum elongatum	5	Tel2E01G049700, Tel4E01G113100, Tel4E01G371500 ... Tel5E01G130300, Tel6E01G740600
Poaceae	Triticum dicoccoides	9	gene_TRIDC2AG001610-24750, gene_TRIDC2AG001610-93564 ... gene_TRIDC2BG001730, gene_TRIDC4AG012710, gene_TRIDC4AG038560, gene_TRIDC4BG010780, gene_TRIDC4BG037600, gene_TRIDC5AG009530, gene_TRIDC5BG011100
Poaceae	Triticum aestivum	13	TraesCS2B02G007700.1, TraesCS2D02G016500.1 ... TraesCS2D02G016900.1, TraesCS4A02G093500.1, TraesCS4A02G245200.2, TraesCS4B02G070200.1, TraesCS4B02G210900.3, TraesCS4D02G069000.1, TraesCS4D02G211600.2, TraesCS5A02G060800.1, TraesCS5B02G071300.1, TraesCS5D02G072300.1, TraesCSU02G007800.1
Poaceae	Zea mays	6	Zm00001eb011970_P003, Zm00001eb030870_P002 ... Zm00001eb051170_P001, Zm00001eb198070_P001, Zm00001eb268250_P001, Zm00001eb397900_P001
Poaceae	Zoysia japonica	6	nbis-gene-20495, nbis-gene-2124, nbis-gene-34870 ... nbis-gene-36008, nbis-gene-3785, nbis-gene-44614
Poaceae	Zoysia macrostachya	6	Zma_g1556, Zma_g25275, Zma_g31466, Zma_g3179, Zma_g3237 ... Zma_g3950
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.1192, evm.TU.LG05.1729, evm.TU.LG05.225 ... evm.TU.LG05.940, evm.TU.LG07.1957, evm.TU.LG15.1201, evm.TU.LG25.1086, evm.TU.LG25.396
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g00530, gene.Posoc03g28060, gene.Posoc03g28160 ... gene.Posoc04g06440
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.288, evm.TU.Scaffold_4_RagTag.1771 ... evm.TU.Scaffold_7_RagTag.537
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19091, nbisL1-mrna-25969, nbisL1-mrna-335 ... nbisL1-mrna-539
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-1492, nbisL1-mrna-9168
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-21863, nbisL1-mrna-4570, nbisL1-mrna-6020
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000002l.537, evm.TU.utg000008l.991 ... evm.TU.utg000019l.1070
Rhizophoraceae	Kandelia obovata	3	Maker00001250, Maker00011998, Maker00012452
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2061, nbisL1-mrna-5844, nbisL1-mrna-6472
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-12469, nbisL1-mrna-2290, nbisL1-mrna-9415
Salicaceae	Populus euphratica	8	populus_peu14288, populus_peu14302, populus_peu20349 ... populus_peu23504, populus_peu23508, populus_peu31924, populus_peu37677, populus_peu37737
Solanaceae	Lycium barbarum	7	gene-LOC132600473, gene-LOC132606134, gene-LOC132621778 ... gene-LOC132623036, gene-LOC132623746, gene-LOC132627956, gene-LOC132640354
Solanaceae	Solanum chilense	4	SOLCI000495900, SOLCI001325500, SOLCI004247600 ... SOLCI005390900
Solanaceae	Solanum pennellii	4	gene-LOC107012053, gene-LOC107012947, gene-LOC107015941 ... gene-LOC107018754
Tamaricaceae	Reaumuria soongarica	4	STRG.31574_chr11_+, STRG.8800_chr03_+, gene_12793, gene_9818
Tamaricaceae	Tamarix chinensis	4	TC04G2310, TC05G1503, TC08G0888, TC11G0536
Zosteraceae	Zostera marina	3	Zosma01g01160.v3.1, Zosma01g15930.v3.1, Zosma04g07390.v3.1