Basic Information
Locus ID:
CH05.4212
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 48826095 | 48830358 | + | CH05.4212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 122,887.02 Da | 49.77 | 76.77 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 848 | 1105 | 2.08814E-112 | - |
| CDD | cd06410 | PB1_UP2 | 91 | 186 | 1.44609E-46 | - |
| Pfam | PF00564 | PB1 domain | 104 | 187 | 1.9E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 844 | 1105 | 6.1E-64 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 103 | 189 | 1.02E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 831 | 1104 | 4.57E-78 | IPR011009 |
| Gene3D | G3DSA:3.10.20.90 | - | 106 | 189 | 1.5E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 835 | 929 | 1.3E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 930 | 1118 | 7.3E-54 | - |
| SMART | SM00220 | serkin_6 | 842 | 1111 | 1.2E-57 | IPR000719 |
| SMART | SM00666 | PB1_new | 102 | 189 | 6.3E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 842 | 1112 | 42.081879 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 848 | 873 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 967 | 979 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 924 | 937 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1076 | 1098 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 961 | 979 | 1.4E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1032 | 1054 | 1.4E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 344 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 8.22E-201 |
| RefSeq | XP_039802664.1 | uncharacterized protein LOC120666789 [Panicum virgatum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 2.29E-179 | |
| TrEMBL | A0A8T0UH57 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG300500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology