Basic Information
Locus ID:
CH05.4200
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
guanine nucleotide-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 48657818 | 48662692 | + | CH05.4200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 103,461.73 Da | 61.46 | 76.29 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00503 | G-protein alpha subunit | 532 | 921 | 5.7E-58 | IPR001019 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 275 | 328 | 2.02E-7 | IPR011011 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 762 | 924 | 1.28E-15 | IPR027417 |
| SUPERFAMILY | SSF47895 | Transducin (alpha subunit), insertion domain | 562 | 711 | 4.84E-17 | IPR011025 |
| Gene3D | G3DSA:3.40.50.300 | - | 724 | 922 | 4.2E-33 | IPR027417 |
| Gene3D | G3DSA:1.10.400.10 | - | 562 | 712 | 8.3E-27 | IPR011025 |
| SMART | SM00275 | galpha_1 | 504 | 915 | 3.5E-15 | IPR001019 |
| ProSiteProfiles | PS51882 | G-alpha domain profile. | 530 | 932 | 51.491035 | IPR001019 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 615 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 234 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23460.1 | extra-large G-protein 1. encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits. | 2.52E-257 |
| RefSeq | XP_034585825.1 | extra-large guanine nucleotide-binding protein 1-like [Setaria viridis] | 0 |
| O80462 | Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=XLG1 PE=1 SV=2 | 2.43E-256 | |
| TrEMBL | A0A4U6VWQ0 | Extra-large guanine nucleotide-binding protein 2 OS=Setaria viridis OX=4556 GN=SEVIR_3G390300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg26233, jg28719, jg28720, jg28724, jg30277, jg40092 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16902, gene_21599 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010334, Ah026672 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g138440, BVRB_9g218240 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12509, Sbi_jg45804, Sbi_jg51541, Sbi_jg5808 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13561, Seu_jg20166 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013493, GOSA_00022394 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl00025, Sgl05094, Sgl34187, Sgl39484, Sgl39533 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000000492, gene:ENSEOMG00000002698 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0018580, CQ.Regalona.r1.6BG0019680 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30113590, pistato.v30113600, pistato.v30207110 ... |
| Apiaceae | Apium graveolens | 5 | Ag10G02270, Ag3G00207, Ag6G02593, Ag9G00129, AgUnG00077 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017810, COCNU_14G010180 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709166, gene-LOC103723888 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2304.V1.1, AsparagusV1_05.3397.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G14598, Ftri17G19545 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G23460.1, AT4G34390.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000039m.g.v1.0, Thhalv10024380m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g02460.v2.2, Sp7g32180.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g020300.2N, BniB02g086980.2N, BniB03g020630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1664, Ceq09G0026 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1704, Cgl09G0031 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g15050, gene.Cymno11g03530 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g05340, gene.Thate06g13380, gene.Thate06g16410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10534, nbisL1-mrna-7068 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2228, evm.TU.LG08.72 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029359, Pov_00035537 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05965, Lb1G05969, Lb3G17191, Lb3G18590 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3920, BH05.4000, CH05.4200 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396300, gene-QOZ80_5BG0444560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0437540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000482 |
| Poaceae | Oryza coarctata | 2 | Oco23G009580, Oco24G009310 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G127700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704170 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018270, Chr06G018900, Chr19G008290, Chr27G008330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G134400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009970, gene_TRIDC5BG011620 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G064400.1, TraesCS5B02G068300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030570_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30473 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25269, Zma_g26058 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.410, evm.TU.LG05.246, evm.TU.LG08.1866 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g28150, gene.Posoc04g06780, gene.Posoc06g16910 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2148, evm.TU.Scaffold_3_RagTag.307 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17195, nbisL1-mrna-549, nbisL1-mrna-5956 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11255, nbisL1-mrna-14543, nbisL1-mrna-16927 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11853, nbisL1-mrna-3389, nbisL1-mrna-6032 |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000011l.1182, evm.TU.utg000016l.178 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00008370, Maker00012723, Maker00016257, Maker00017354 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15547, nbisL1-mrna-4740, nbisL1-mrna-6464 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-14077, nbisL1-mrna-2275, nbisL1-mrna-3159 |
| Salicaceae | Populus euphratica | 5 | populus_peu08944, populus_peu14269, populus_peu23478 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599116, gene-LOC132623225 |
| Solanaceae | Solanum chilense | 2 | SOLCI002767500, SOLCI003385200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010039, gene-LOC107011325 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11377_chr02_-, gene_3820 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2149, TC10G0537 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06910.v3.1 |