HalophFGD

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Basic Information
Locus ID: CH05.4197
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: B3 DNA binding domain
Maps and Mapping Data
Chromosome Start End Strand ID
CH05 48583288 48602311 + CH05.4197
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.02 294,864.06 Da 44.41 78.08 -0.47
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00303 retropepsin_like 677 754 7.16064E-7 -
CDD cd10017 B3_DNA 1998 2087 1.4408E-18 IPR003340
CDD cd10017 B3_DNA 1866 1953 1.27815E-16 IPR003340
CDD cd01647 RT_LTR 963 1143 4.67076E-80 -
CDD cd10017 B3_DNA 2510 2607 1.12455E-14 IPR003340
CDD cd10017 B3_DNA 2362 2455 2.34512E-13 IPR003340
CDD cd10017 B3_DNA 2149 2240 1.05464E-23 IPR003340
Pfam PF17919 RNase H-like domain found in reverse transcriptase 1208 1277 1.4E-15 IPR041577
Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 981 1143 2.9E-21 IPR000477
Pfam PF02362 B3 DNA binding domain 2512 2607 1.1E-13 IPR003340
Pfam PF17921 Integrase zinc binding domain 1437 1489 3.1E-8 IPR041588
Pfam PF02362 B3 DNA binding domain 1871 1954 1.7E-12 IPR003340
Pfam PF02362 B3 DNA binding domain 2151 2240 1.7E-16 IPR003340
Pfam PF02362 B3 DNA binding domain 2003 2087 1.0E-15 IPR003340
Pfam PF02362 B3 DNA binding domain 2372 2453 1.7E-10 IPR003340
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain 2357 2454 6.87E-16 IPR015300
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain 1862 1957 9.61E-18 IPR015300
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain 2145 2244 1.12E-24 IPR015300
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain 1992 2091 1.94E-20 IPR015300
SUPERFAMILY SSF53098 Ribonuclease H-like 1501 1617 7.28E-23 IPR012337
SUPERFAMILY SSF56672 DNA/RNA polymerases 923 1298 4.0E-113 IPR043502
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain 2506 2610 4.32E-17 IPR015300
Gene3D G3DSA:3.30.70.270 - 1006 1143 4.1E-61 IPR043128
Gene3D G3DSA:2.40.330.10 - 2341 2457 2.5E-17 IPR015300
Gene3D G3DSA:2.40.70.10 Acid Proteases 658 767 9.1E-11 IPR021109
Gene3D G3DSA:3.30.70.270 - 1153 1236 4.5E-19 IPR043128
Gene3D G3DSA:2.40.330.10 - 2490 2611 7.4E-25 IPR015300
Gene3D G3DSA:3.10.20.370 - 1237 1283 1.2E-6 -
Gene3D G3DSA:3.10.10.10 HIV Type 1 Reverse Transcriptase, subunit A, domain 1 924 1068 4.1E-61 -
Gene3D G3DSA:1.10.340.70 - 1399 1489 5.4E-13 -
Gene3D G3DSA:3.30.420.10 - 1587 1652 1.1E-6 IPR036397
Gene3D G3DSA:2.40.330.10 - 2144 2244 1.4E-25 IPR015300
Gene3D G3DSA:2.40.330.10 - 1860 1957 3.7E-20 IPR015300
Gene3D G3DSA:3.30.420.10 - 1498 1586 2.9E-21 IPR036397
Gene3D G3DSA:2.40.330.10 - 1990 2091 1.1E-22 IPR015300
SMART SM01019 B3_2 1999 2089 2.0E-13 IPR003340
SMART SM01019 B3_2 2512 2609 5.2E-13 IPR003340
SMART SM01019 B3_2 2151 2242 7.9E-17 IPR003340
SMART SM01019 B3_2 1868 1955 0.0014 IPR003340
SMART SM01019 B3_2 2365 2458 5.7E-10 IPR003340
ProSiteProfiles PS50994 Integrase catalytic domain profile. 1504 1588 12.211419 IPR001584
ProSiteProfiles PS50863 B3 DNA-binding domain profile. 1996 2089 13.323747 IPR003340
ProSiteProfiles PS50863 B3 DNA-binding domain profile. 2149 2242 13.563472 IPR003340
ProSiteProfiles PS50863 B3 DNA-binding domain profile. 1862 1955 11.335435 IPR003340
ProSiteProfiles PS50863 B3 DNA-binding domain profile. 2363 2458 11.673871 IPR003340
ProSiteProfiles PS50863 B3 DNA-binding domain profile. 2512 2609 12.957108 IPR003340
ProSiteProfiles PS50878 Reverse transcriptase (RT) catalytic domain profile. 961 1143 8.957613 IPR000477
MobiDBLite mobidb-lite consensus disorder prediction 511 533 - -
MobiDBLite mobidb-lite consensus disorder prediction 403 439 - -
MobiDBLite mobidb-lite consensus disorder prediction 284 318 - -
MobiDBLite mobidb-lite consensus disorder prediction 561 610 - -
MobiDBLite mobidb-lite consensus disorder prediction 586 607 - -
MobiDBLite mobidb-lite consensus disorder prediction 1342 1370 - -
MobiDBLite mobidb-lite consensus disorder prediction 562 576 - -
MobiDBLite mobidb-lite consensus disorder prediction 63 97 - -
MobiDBLite mobidb-lite consensus disorder prediction 2282 2324 - -
MobiDBLite mobidb-lite consensus disorder prediction 363 390 - -
MobiDBLite mobidb-lite consensus disorder prediction 776 826 - -
MobiDBLite mobidb-lite consensus disorder prediction 284 326 - -
MobiDBLite mobidb-lite consensus disorder prediction 403 423 - -
Coils Coil Coil 520 540 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0003677 (DNA binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G24650.6 - 5.22E-8
RefSeq XP_050207440.1 uncharacterized protein LOC126656861 [Mercurialis annua] 2.02E-279
Swiss-Prot Q2QMT7 B3 domain-containing protein Os12g0591400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0591300 PE=2 SV=1 4.56E-154
TrEMBL L0P3P1 PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 30 AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ...
BH03.2404, BH03.4279, BH04.1700, BH04.2314, BH07.2266, BH07.3065, BH08.1559, BH09.968, CH01.4222, CH02.2774, CH02.2789, CH03.1862, CH03.870, CH05.2682, CH05.4197, CH06.878, CH07.1301, CH07.1506, CH07.3848, CH08.557, CH09.1858, CH09.250, CH09.457, Contig522.18
Poaceae Lolium multiflorum 2 gene-QYE76_053643, gene-QYE76_056610
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.