Basic Information
Locus ID:
CH05.4152
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 47815147 | 47818021 | + | CH05.4152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 28,904.84 Da | 77.27 | 55.79 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 216 | 260 | 4.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 265 | 1.29E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 264 | 1.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 216 | 260 | 0.0067 | IPR011016 |
| SMART | SM00184 | ring_2 | 217 | 259 | 4.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 217 | 260 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 64 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 3.01E-9 |
| RefSeq | XP_025808119.1 | probable E3 ubiquitin-protein ligase RHY1A [Panicum hallii] | 4.3E-133 |
| B0XQY0 | DSC E3 ubiquitin ligase complex subunit A OS=Aspergillus fumigatus (strain CBS 144.89 / FGSC A1163 / CEA10) OX=451804 GN=dscA PE=3 SV=1 | 5.78E-7 | |
| TrEMBL | A0A2T7EIH4 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G451100 PE=4 SV=1 | 6.1E-133 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.3909, BH05.3935, CH05.4152 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0395530, gene-QOZ80_5BG0443860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0439510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001362 |
| Poaceae | Oryza coarctata | 2 | Oco23G009380, Oco24G008940 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g39110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G118900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705446, Pt_Chr0705460 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G018460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G148900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG010980, gene_TRIDC5BG012780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G072600.1, TraesCS5B02G078400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb030010_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30421 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26027 |