Basic Information
Locus ID:
CH05.4069
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 46934108 | 46938844 | - | CH05.4069 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 74,097.94 Da | 46.57 | 96.78 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 307 | 1.26384E-27 | - |
| Pfam | PF04564 | U-box domain | 261 | 331 | 2.7E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 507 | 4.1E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 387 | 425 | 1.6E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 428 | 466 | 7.1E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 643 | 7.2E-51 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 336 | 3.03E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 473 | 635 | 1.3E-23 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 31 | 127 | 7.1E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 334 | 3.9E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 342 | 472 | 3.6E-26 | IPR011989 |
| SMART | SM00185 | arm_5 | 468 | 508 | 3.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 550 | 590 | 190.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 2.9E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 427 | 467 | 0.0048 | IPR000225 |
| SMART | SM00185 | arm_5 | 386 | 426 | 1.7E-5 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 45.672115 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 397 | 439 | 13.0724 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 681 | - | - |
| Coils | Coil | Coil | 133 | 153 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 5.78E-138 |
| RefSeq | XP_039839867.1 | protein spotted leaf 11-like [Panicum virgatum] | 4.44E-298 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 2.14E-253 | |
| TrEMBL | A0A8T0V6I0 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3KG494900 PE=4 SV=1 | 1.0E-296 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology