Basic Information
Locus ID:
CH05.402
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein of unknown function (DUF1668)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 3059587 | 3060948 | - | CH05.402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 49,748.99 Da | 39.66 | 82.34 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 111 | 404 | 4.0E-46 | IPR012871 |
| SUPERFAMILY | SSF117281 | Kelch motif | 153 | 300 | 1.44E-6 | IPR015915 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 72 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015619134.1 | uncharacterized protein LOC107275664 [Oryza sativa Japonica Group] | 3.28E-147 |
| TrEMBL | A0A835KJZ1 | Transcription factor WD40-like family OS=Digitaria exilis OX=1010633 GN=HU200_017660 PE=4 SV=1 | 1.13E-212 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 24 | AH02.3348, AH03.1478, AH03.2495, AH04.205, AH06.2931 ... |
| Poaceae | Eleusine coracana subsp. coracana | 16 | gene-QOZ80_3AG0208570, gene-QOZ80_3AG0208580 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000182, gene-QYE76_000184 |
| Poaceae | Oryza coarctata | 6 | Oco01G007980, Oco01G012320, Oco02G008270, Oco02G012460 ... |
| Poaceae | Oryza sativa | 11 | LOC_Os01g05540.1, LOC_Os01g05560.1, LOC_Os02g10450.1 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205117, Pt_Chr0206485, Pt_Chr0206765 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr19G011890 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G668700, Tel5E01G820000 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3BG041200, gene_TRIDC3BG041270 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS1B02G314200.1, TraesCS1D02G303300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb399700_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-25719, nbis-gene-25738, nbis-gene-25739 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24675, Zma_g24688 |