Basic Information
Locus ID:
CH05.3991
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 46144006 | 46150463 | + | CH05.3991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 84,157.13 Da | 55.17 | 70.44 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 491 | 737 | 3.27986E-132 | - |
| CDD | cd00130 | PAS | 121 | 222 | 3.79176E-16 | IPR000014 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 486 | 737 | 2.4E-68 | IPR001245 |
| Pfam | PF00989 | PAS fold | 113 | 220 | 2.4E-16 | IPR013767 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 110 | 219 | 9.42E-21 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 455 | 737 | 2.29E-84 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 478 | 562 | 3.8E-30 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 757 | 1.0E-63 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 123 | 228 | 3.0E-26 | - |
| SMART | SM00220 | serkin_6 | 485 | 745 | 9.3E-59 | IPR000719 |
| SMART | SM00091 | pas_2 | 112 | 179 | 1.2E-11 | IPR000014 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 111 | 222 | 1.7E-14 | IPR000014 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 485 | 746 | 44.838009 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 110 | 181 | 19.277763 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 604 | 616 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 664 | 686 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 559 | 572 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 645 | 655 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 708 | 730 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 598 | 616 | 1.1E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 64 | - | - |
| Coils | Coil | Coil | 5 | 25 | - | - |
| Coils | Coil | Coil | 730 | 750 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67890.1 | PAS domain-containing protein tyrosine kinase family protein. | 6.41E-274 |
| RefSeq | XP_004962762.1 | probable serine/threonine-protein kinase SIS8 isoform X2 [Setaria italica] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 5.31E-105 | |
| TrEMBL | K3Z429 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101767428 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology