Basic Information
Locus ID:
CH05.3987
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 46116533 | 46118773 | - | CH05.3987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 55,857.44 Da | 74.99 | 50.92 | -1.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 476 | 507 | 1.5E-5 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 378 | 459 | 7.5E-19 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 378 | 460 | 1.1E-26 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 305 | - | - |
| Coils | Coil | Coil | 367 | 404 | - | - |
| Coils | Coil | Coil | 412 | 435 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 3.59E-56 |
| RefSeq | XP_025808696.1 | DNA ligase 1-like [Panicum hallii] | 2.68E-249 |
| TrEMBL | A0A2T8KLP8 | PAPA-1 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G461000 PE=4 SV=1 | 6.06E-248 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology