Basic Information
Locus ID:
CH05.3870
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 44486248 | 44490522 | + | CH05.3870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 42,360.48 Da | 51.81 | 62.18 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 124 | 200 | 1.2E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 302 | 359 | 4.1E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 254 | 297 | 1.5E-8 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 120 | 189 | 4.84E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 301 | 1.74E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 191 | 248 | 2.22E-20 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 307 | 1.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 326 | 365 | 1.2E-17 | - |
| SMART | SM00184 | ring_2 | 255 | 297 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 190 | 254 | 34.905949 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 255 | 298 | 11.913911 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 117 | 188 | 24.965153 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 381 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 2.93E-106 |
| RefSeq | XP_025804804.1 | E3 ubiquitin-protein ligase MIEL1-like isoform X2 [Panicum hallii] | 1.33E-184 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 2.82E-105 | |
| TrEMBL | A0A8T0UF38 | E3 ubiquitin-protein ligase MIEL1 OS=Panicum virgatum OX=38727 GN=PVAP13_3NG186900 PE=4 SV=1 | 3.67E-184 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology