Basic Information
Locus ID:
CH05.3852
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 44339714 | 44347644 | - | CH05.3852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 150,047.16 Da | 60.17 | 68.23 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 1219 | 1328 | 1.2E-12 | IPR044862 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 914 | 1041 | 1.96E-11 | IPR038765 |
| Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 1132 | 1329 | 9.4E-63 | - |
| Gene3D | G3DSA:3.40.395.10 | Adenoviral Proteinase; Chain A | 897 | 1098 | 9.6E-7 | - |
| SMART | SM00702 | p4hc | 1139 | 1329 | 6.1E-45 | IPR006620 |
| ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 1215 | 1330 | 9.168968 | IPR005123 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 802 | 831 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 66 | - | - |
| Coils | Coil | Coil | 466 | 500 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20270.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein. | 2.35E-74 |
| RefSeq | XP_039841158.1 | probable prolyl 4-hydroxylase 3 [Panicum virgatum] | 2.08E-91 |
| Q9LN20 | Probable prolyl 4-hydroxylase 3 OS=Arabidopsis thaliana OX=3702 GN=P4H3 PE=2 SV=1 | 2.26E-73 | |
| TrEMBL | B8BAR1 | ULP_PROTEASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29206 PE=3 SV=1 | 2.13E-182 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |