Basic Information
Locus ID:
CH05.3741
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 42835442 | 42841856 | - | CH05.3741 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 144,782.11 Da | 51.52 | 76.13 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 595 | 712 | 5.32508E-34 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 596 | 729 | 2.3E-22 | IPR000608 |
| Pfam | PF13912 | C2H2-type zinc finger | 963 | 987 | 1.5E-10 | - |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 960 | 988 | 4.42E-5 | IPR036236 |
| SUPERFAMILY | SSF54495 | UBC-like | 578 | 759 | 1.59E-36 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 555 | 811 | 4.0E-74 | IPR016135 |
| SMART | SM00212 | ubc_7 | 595 | 746 | 1.0E-18 | - |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 964 | 986 | 9.577168 | IPR013087 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 592 | 750 | 32.177197 | IPR000608 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 966 | 986 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1201 | 1231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1203 | 1225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 894 | 942 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33770.1 | phosphate 2. Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. | 2.37E-92 |
| RefSeq | XP_034586741.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 1.0E-232 |
| Q8VY10 | Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana OX=3702 GN=UBC24 PE=1 SV=1 | 2.32E-91 | |
| TrEMBL | A0A1E5VGN7 | Putative ubiquitin-conjugating enzyme E2 24 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |