Basic Information
Locus ID:
CH05.3740
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 42814274 | 42824151 | - | CH05.3740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 142,077.42 Da | 54.05 | 69.86 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54495 | UBC-like | 619 | 774 | 1.88E-12 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 603 | 681 | 1.7E-8 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 684 | 817 | 2.4E-32 | IPR016135 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1085 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1127 | 1186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1010 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 4.89E-99 |
| RefSeq | XP_034586741.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 8.96E-216 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 4.78E-98 | |
| TrEMBL | A0A1E5VGN7 | Putative ubiquitin-conjugating enzyme E2 24 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |