Basic Information
Locus ID:
CH05.3733
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 42696799 | 42700518 | + | CH05.3733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.87 | 95,980.60 Da | 44.93 | 83.18 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 616 | 737 | 9.92734E-35 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 617 | 748 | 2.8E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 602 | 780 | 2.61E-37 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 576 | 844 | 3.2E-74 | IPR016135 |
| SMART | SM00212 | ubc_7 | 616 | 773 | 1.9E-23 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 613 | 771 | 34.770184 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16920.1 | ubiquitin-conjugating enzyme 23. | 1.17E-93 |
| RefSeq | XP_034585217.1 | probable ubiquitin-conjugating enzyme E2 23 [Setaria viridis] | 3.63E-285 |
| Q9ZVX1 | Probable ubiquitin-conjugating enzyme E2 23 OS=Arabidopsis thaliana OX=3702 GN=UBC23 PE=1 SV=1 | 1.14E-92 | |
| TrEMBL | A0A1E5VGN7 | Putative ubiquitin-conjugating enzyme E2 24 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0014767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 15 | AH05.1035, BH05.1090, BH05.3569, BH05.3573, BH05.3575 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_5AG0399110, gene-QOZ80_5AG0399230 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_014680, gene-QYE76_032195, gene-QYE76_061273 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G032900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr27G009630 |