Basic Information
Locus ID:
CH05.3727
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 42548651 | 42549870 | + | CH05.3727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 39,917.96 Da | 39.82 | 89.31 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 96 | 7.19E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 35 | 85 | 3.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025822383.1 | uncharacterized protein LOC112898230 [Panicum hallii] | 1.72E-50 |
| TrEMBL | A0A8T0V9I7 | DUF295 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3KG438004 PE=4 SV=1 | 3.12E-140 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.3564, CH05.3727, CH05.3746 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_5AG0391720, gene-QOZ80_5AG0391740 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0101690.1, HORVU.MOREX.r3.2HG0101700.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_002505, gene-QYE76_033379, gene-QYE76_035213 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G079100, gene-BS78_08G079200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G015570, Chr06G016380, Chr06G016400, Chr06G016420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G112000 |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G047700.1, TraesCS2B02G059300.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30169 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25875 |