Basic Information
Locus ID:
CH05.3725
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
flocculation via cell wall protein-carbohydrate interaction
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 42505460 | 42511987 | - | CH05.3725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 86,437.74 Da | 67.95 | 76.08 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 207 | 262 | 1.2E-7 | IPR029480 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 629 | 723 | 1.26E-7 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 484 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025882394.1 | uncharacterized protein LOC112939433 [Oryza sativa Japonica Group] | 4.2E-34 |
| TrEMBL | B8BAR1 | ULP_PROTEASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29206 PE=3 SV=1 | 1.91E-119 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |