Basic Information
Locus ID:
CH05.369
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 2864856 | 2872784 | + | CH05.369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 102,333.93 Da | 58.15 | 63.48 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 111 | 235 | 5.6E-18 | IPR044822 |
| Pfam | PF01167 | Tub family | 585 | 900 | 3.2E-113 | IPR000007 |
| Pfam | PF00646 | F-box domain | 521 | 574 | 8.4E-11 | IPR001810 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 571 | 905 | 7.32E-99 | IPR025659 |
| SUPERFAMILY | SSF81383 | F-box domain | 511 | 565 | 1.57E-6 | IPR036047 |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 758 | 905 | 2.2E-49 | IPR025659 |
| Gene3D | G3DSA:1.10.10.60 | - | 114 | 185 | 4.0E-12 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 517 | 570 | 2.8E-5 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 579 | 757 | 4.7E-44 | IPR025659 |
| ProSitePatterns | PS01200 | Tub family signature 1. | 824 | 837 | - | IPR018066 |
| ProSitePatterns | PS01201 | Tub family signature 2. | 890 | 905 | - | IPR018066 |
| PRINTS | PR01573 | Tubby superfamily signature | 806 | 823 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 862 | 881 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 701 | 728 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 824 | 840 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 654 | 678 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 638 | 654 | 2.7E-73 | IPR000007 |
| PRINTS | PR01573 | Tubby superfamily signature | 883 | 905 | 2.7E-73 | IPR000007 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 108 | - | - |
| Coils | Coil | Coil | 314 | 341 | - | - |
| Coils | Coil | Coil | 343 | 372 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76900.1 | tubby like protein 1. Member of TLP family | 5.34E-188 |
| RefSeq | XP_004977311.1 | tubby-like F-box protein 14 [Setaria italica] | 1.96E-303 |
| Q2QXB2 | Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP14 PE=2 SV=1 | 5.61E-258 | |
| TrEMBL | A0A1E5W3R6 | Tubby-like F-box protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007004 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology