Basic Information
Locus ID:
CH05.3680
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 41638499 | 41652732 | + | CH05.3680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 94,212.08 Da | 42.39 | 90.05 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 49 | 332 | 5.4E-39 | IPR000719 |
| Pfam | PF00635 | MSP (Major sperm protein) domain | 697 | 785 | 5.6E-13 | IPR000535 |
| Pfam | PF00069 | Protein kinase domain | 403 | 667 | 6.1E-47 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 390 | 675 | 1.35E-69 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 690 | 817 | 2.88E-19 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 351 | 2.81E-54 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 144 | 348 | 4.7E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 120 | 1.1E-17 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 370 | 476 | 1.8E-22 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 689 | 815 | 4.4E-23 | IPR013783 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 494 | 688 | 1.2E-51 | - |
| SMART | SM00220 | serkin_6 | 49 | 341 | 3.8E-13 | IPR000719 |
| SMART | SM00220 | serkin_6 | 402 | 678 | 3.3E-36 | IPR000719 |
| ProSiteProfiles | PS50202 | Major sperm protein (MSP) domain profile. | 692 | 812 | 18.20941 | IPR000535 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 49 | 336 | 30.760544 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 402 | 673 | 34.98661 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 535 | 547 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11900.9 | - | 9.31E-44 |
| RefSeq | XP_039801974.1 | uncharacterized protein LOC120666246 isoform X2 [Panicum virgatum] | 2.34E-286 |
| Q9T058 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g11900 OS=Arabidopsis thaliana OX=3702 GN=At4g11900 PE=2 SV=1 | 1.35E-42 | |
| TrEMBL | A0A8T0UK86 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG233400 PE=4 SV=1 | 5.29E-285 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | BH05.3525, CH04.920, CH05.3680, Contig522.28 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_5AG0380720, gene-QOZ80_5BG0439080 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0225170.1, HORVU.MOREX.r3.7HG0748020.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_036867, gene-QYE76_036876, gene-QYE76_036884 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_06G051900, gene-BS78_08G093000 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0401585 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G157900, Tel7E01G940400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG004390, gene_TRIDC7AG075260 ... |
| Poaceae | Triticum aestivum | 20 | TraesCS3A02G073900.1, TraesCS3D02G522300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb164620_P001 |