Basic Information
Locus ID:
CH05.3642
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 41013131 | 41024997 | + | CH05.3642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 145,351.50 Da | 49.00 | 75.30 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 188 | 304 | 2.29145E-37 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 329 | 657 | 3.6795E-168 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 331 | 652 | 2.0E-46 | IPR001394 |
| Pfam | PF00917 | MATH domain | 193 | 313 | 1.1E-20 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1018 | 1227 | 2.7E-56 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 756 | 1008 | 1.1E-76 | IPR024729 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 326 | 682 | 7.26E-97 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 184 | 319 | 1.96E-41 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 816 | 933 | 5.0E-45 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 184 | 327 | 3.0E-53 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 328 | 656 | 1.3E-89 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 934 | 1031 | 8.9E-28 | - |
| SMART | SM00061 | math_3 | 188 | 292 | 2.9E-22 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 331 | 655 | 40.289238 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 186 | 311 | 38.74984 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 332 | 347 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 571 | 588 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 143 | - | - |
| Coils | Coil | Coil | 671 | 691 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039839439.1 | ubiquitin C-terminal hydrolase 12-like isoform X1 [Panicum virgatum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T0V7S7 | ubiquitinyl hydrolase 1 OS=Panicum virgatum OX=38727 GN=PVAP13_3KG431800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology