Basic Information
Locus ID:
CH05.3541
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RCE1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH05 | 38657128 | 38669087 | - | CH05.3541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.10 | 61,944.26 Da | 75.13 | 71.41 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 289 | 423 | 4.00016E-39 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 289 | 424 | 1.7E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 270 | 431 | 7.79E-49 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 281 | 434 | 2.7E-46 | IPR016135 |
| SMART | SM00212 | ubc_7 | 288 | 430 | 6.6E-38 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 285 | 430 | 38.765423 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 357 | 372 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 562 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 5.41E-96 |
| RefSeq | XP_004956274.1 | NEDD8-conjugating enzyme Ubc12 [Setaria italica] | 3.19E-119 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 5.2E-95 | |
| TrEMBL | A0A811SC64 | UBC core domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS62563 PE=3 SV=1 | 2.31E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||